Clinical Informatics
Resources and services are provided by the Stanford Center for Clinical Informatics (SCCI).
Services available to assist the investigator with informatics and data management needs, include:
- Electronic Health Records — access to data for research purposes
- Research data management solutions
- Biospecimen data management software and services
- Research privacy and security assistance
Contact Information
Stanford Center for Clinical Informatics
Contact Us
(650) 724-6920
Clinical Informatics — Information & Consultations
The Stanford Center for Clinical Informatics (SCCI) provides a variety of services to facilitate clinical and translational research:
- Access to SUMC Clinical Data for Research Purposes
- Research Data Management Solutions
- Real-time Research Alerting
- Biospecimen Data Management
- Privacy and Security
- SCCI consultants can also help review your project's data management and informatics needs and assist with developing a budget and Informatics/IT support proposal section for your grant prior to submission.
- For additional information, use Study Navigator to schedule a free consultation.
Next Steps
- Schedule Consultation
Consultation will be scheduled in Study Navigator
- More Information
SCCI Services website
Assistance with Proposals — Budget and Informatics/IT Support Section
Stanford Center for Clinical Informatics (SCCI) consultants will help review your project's data management and informatics needs and assist with developing a budget and Informatics/IT support proposal section for your grant prior to submission.
Next Steps
- Request a Consultation
Schedule a consultation through Study Navigator
The Electronic Health Record
A key focus of the activities of the Stanford Center for Clinical Informatics (SCCI) is the Electronic Health Record (EHR), and how the EHR can support the development of evidence-based medicine through translational, clinical and outcomes-based research, while ensuring the security and privacy of individual patient information.
SCCI is the official SUMC clearing house for all clinical data requests related to research. With access to clinical data from the Electronic Health Records of both hospitals, SCCI can meet your clinical research data needs, either via our self service online tools or with an in person consultation.
Next Steps
- More Information
Stanford Center for Clinical Informatics website
Biospecimen Data Management
The Stanford Center for Clinical Informatics (SCCI) can provide you with sophisticated biospecimen data management tools.
You can also our online search tool to search for biospecimens in several biospecimen banks supported by STRIDE.
Next Steps
- More Information
SCCI Biospecimen Data Management
Research Data Management Tools
Stanford School of Medicine offers a number of data capture platforms to facilitate clinical research, all of which are recommended over the more traditional choices of Excel, Filemaker Pro and Access, since all three satisfy the HIPAA Privacy Rule requirements.
- STRIDE-DM, the Data Management application development platform of the Stanford Translational Research Integrated Database Environment, was developed by the Stanford Center for Clinical Informatics (SCCI). It supports the design of custom research data capture systems and also offers integration with the STRIDE Clinical Data Warehouse, which contains both current and historic clinical data from both LPCH and SHC. STRIDE-DM research data management systems are all custom-built by SCCI application developers in exchange for salary support to cover the time spent building the database. There is an annual maintenance fee.
- REDCap is a self-service system where the researcher defines the database fields either in a spreadsheet or with the help of user-friendly web tools; once the database fields have been finalized, you can start entering data immediately. SCCI offers complementary support during the process of defining and refining your database. There is no annual maintenance fee, thanks in part to funding from the Stanford CTSA (Spectrum).
- STRIDE Secure Workbench is a remote desktop platform allowing researchers to analyze sensitive data with 3rd party software in a secure environment.
- Additional commercial products are also available, such as Medrio (frequently used in drug trials), or Oracle Axis.
Next Steps
- Study Navigator
Use Study Navigator to schedule an informatics consultation to learn more about these options.
- More Information
Detailed information and a comparative analysis of these data management tools.
Access Clinical Data Related to Research (STRIDE / Electronic Health Records)
Research Data Management Solutions — Consultations
- Consultation – Implementing a database
The Center supports two research data management options: Custom research data management applications built on the STRIDE platform and databases created in a standalone self-service database (REDCap).
During an in-person consultation, center consultants will review options and discuss the tradeoffs of various approaches. We can also summarize research data management best practices and describe the support that we can provide to you toward meeting regulatory requirements such as FDA Part 11. - Technical Consultation – For the Research Coordinator/ Data Manager
This technical consultation is intended primarily for a research lab's data manager. You will be given a review of the online data management tools (REDCap) and application development infrastructure provided by the Center to SoM research projects. The review will give you an understanding of the benefits and restrictions of each tool, as well as the technical competence required to use each one. One-on-one hands on training in getting started with building REDCap databases can also be provided.
Key Points
- Contact SCCI as early as possible in the design phase of a research project and preferably well in advance of IRB submission.
- If the scope of the project exceeds four hours of our time, funding may be required to complete the project.
Next Steps
- More Information
Detailed information about services & fees.
Research Data Management Best Practices (consultation)
Stanford Center for Clinical Informatics (SCCI) consultants will review options for research data management. The consultant will:
- discuss the tradeoffs of various approaches, including REDCap, STRIDE Secure Workbench, STRIDE-DM, and commercial software
- summarize research data management best practices and
- describe the support that SCCI can provide to you toward meeting regulatory requirements such as FDA Part 11.
Next Steps
- Schedule Consultation
Your consultation will be scheduled in Study Navigator.
Review Project for Privacy and Security Requirements
Stanford Center for Clinical Informatics (SCCI) consultants will:
- review your research project from a HIPAA perspective
- help identify areas of risk
- provide recommendations to achieve regulatory compliance and follow data security best practices
Consultants will also provide assistance in:
- meeting data privacy and security requirements for IRB submission
- biomedical research privacy and security regulatory compliance
- securing PHI on your computer
Identify a Patient Cohort for Research
The STRIDE Cohort Discovery Tool provides a self-service method for asking questions to help identify a cohort of patients for a potential study. Search criteria can include demographics, diagnosis and procedure codes (ICD-9 and CPT), test results, and text search of clinical documents.
This service is provided by the Stanford Center for Clinical Informatics.
Next Steps
- Schedule a Consultation
Schedule your consultation using Study Navigator - More information
STRIDE Cohort Discovery Tool
Acknowledge Grant Support — Wording for Manuscripts
REQUIREMENT!
The National Institute of Health (NIH) requires researchers to acknowledge federal funding in peer-reviewed publications and presentations.
Spectrum is part of the Clinical and Translational Science Award (CTSA) program, funded by the National Center for Advancing Translational Sciences (Grant Number UL1 TR000093) at the National Institutes of Health (NIH). All publications resulting from the use of Spectrum resources must comply with the NIH Public Access Policy and NIH Funding Acknowledgment requirements.
Spectrum/CTSA resources or services that qualify as “NIH-funded” include:
- Biostatistics, study design, or bioethics consultations
- Freidenrich Center (CTRU) facilities or resources
- Spectrum innovation or pilot grants
- Advice or training from Spectrum study coordinators or regulatory experts
New NIH publicity requirements: As of April 2012, all grantee institutions are required to acknowledge federal funding in every journal article, news release, news story, or other story for public dissemination that features NIH-supported research. Including this information will help the NIH populate the Research Portfolio Online Reporting Tool Expenditures and Results (RePORTER) tool found at report.nih.gov with compelling descriptions of the research they support, and to communicate the value of taxpayer-funded research to the media, advocates and policymakers.
If you have a pending NIH-funded study about to be published, please notify the relevant NIH communication office of the release or story before publication. For projects using Spectrum/CTSA resources, send such notification to the Spectrum Communications Manager
, who will properly coordinate it with the NIH Office of Communications (info@ncats.nih.gov).
For more info:
CITATION LANGUAGE
Spectrum / CTSA Resources –
For projects using Spectrum/CTSA resources, including those that benefited from consultations with bioinformatics, bioethics, and research coordinators, please use this wording:
“The project described was supported by the National Center for Research Resources and the National Center for Advancing Translational Sciences, National Institutes of Health, through UL1 TR000093 (formerly UL1 RR025744). The content is solely the responsibility of the authors and does not necessarily represent the official views of the NIH.”
- For K award-supported scholars, the grant number to use is: KL2 RR025743
- For T award-supported trainees, the grant number to use is: TL1 RR025742
STRIDE –
Please cite both Stanford CTSA Grant UL1 RR025744 as mentioned above and STRIDE for projects which include the use of any of the following:
- Anonymous Cohort Identification Tool
- Data consultations and clinical queries
- Data extraction services
- STRIDE Clinical Data Review Tool
REDCap or REDCap Survey –
For projects using REDCap or REDCap Survey to collect, manage, or report data, please cite both Stanford CTSA Grant UL1 RR025744 as mentioned above and REDCap.
Overview of the Clinical Informatics Program
Spectrum supports the development of innovative informatics solutions that address major barriers to effective CTR research both at Stanford and across the national clinical research enterprise. In addition to ongoing research and development, services are provided to assist the investigator with informatics and data management needs.
Consultation services and assistance are provided by the Stanford Center for Clinical Informatics and include:
- Access to data from the Electronic Health Records at Stanford Hospital and Clinics and Lucile Packard Children's Hospital for research purposes.
- Research data management solutions for both small and complex research projects.
- Biospecimen data management software and services.
- Research privacy and security assistance.
Key Points
- Initial consultations for Child Health studies must be scheduled through Study Navigator.
- It is highly recommended that initial consultations for Adult studies be scheduled through Study Navigator.
Next Steps
- Request a Consultation
Initial consultations are scheduled through Study Navigator
Leadership — Clinical Informatics Program
Henry Lowe, MD
Leader — Spectrum Clinical Informatics
Director of Stanford Center for Clinical Informatics
Senior Associate Dean for Information Resources & Technology (IRT)
Associate Professor (Research) of Pediatrics
Phone: (650) 725-3393
Email:
Todd Ferris, MD, MS
Co-Leader — Spectrum Clinical Informatics
Informatics Coordinator and Director of Privacy and Security
Phone: (650) 725-1825
Email:
Program Contact Information
Informatics consultation services are provided through the Stanford Center for Clinical Informatics (SCCI).
- Initial consultations for Child Health studies must be scheduled through Study Navigator.
- It is highly recommended that initial consultations for Adult studies be scheduled through Study Navigator.
Stanford Center for Clinical Informatics
Medical School Office Building, MSOB X200
251 Campus Drive
Stanford University
Stanford CA 94305-5412
Phone: (650) 725-3393
Support: (650) 724-6920
Fax: (650) 736-8328
Email:
Personnel Directory
Director of Stanford Center for Clinical Informatics
Henry Lowe, MD
Senior Associate Dean for Information Resources & Technology (IRT)
Phone: (650) 725-3393
Email:
Informatics Services
Todd Ferris, MD, MS
Informatics Coordinator and Director of Privacy and Security
Phone: (650) 725-1825
Email:
Clinical and Translational Research Informatics Specialist
Gomathi Krishnan, PhD
Phone: (650) 644-9429
Email:
Informatics Systems Development
Susan Weber, PhD
Director of Informatics Systems and Software Development
Phone: (650) 766-5145
Email:
Also see https://clinicalinformatics.stanford.edu/people.html
